If the clutch only controls the PTO, I'd be looking there. Whether that would be from the clutch to the PTO shaft or any implement that you run. Make sure there isn't something that is binding, causing the clutch hub to be loaded against the springs.
While the tractor is split and if you can, engage the PTO and turn the transmission input shaft by hand. See if you can feel any binding. If possible, connect your implements and try turning the input with them attached.
While the tractor is split and if you can, engage the PTO and turn the transmission input shaft by hand. See if you can feel any binding. If possible, connect your implements and try turning the input with them attached.