I see this is an old thread but thought I would add some input anyways.
Those u-cup seal installers may work for some but every time I try to use one the seal pops back off before it's lined up with the groove and I end up installing it with my finger anyways. I saw a homemade one made from a hinge that looked like it worked better than the round rod ones sold. The center pivot was round but the outer parts were cut down parts of the hinge leaves that had the edges rounded.
For piston seals I soak them in hot hydraulic fluid and work them on the piston with a screwdriver. I put the seal in a metal dog food bowl with oil in it and position a space heater over the bowl to get it hot. I use a stubby straight slot screwdriver I have rounded and polished the edges on. After you get them in place you have to compress them. There ain't no calibration to it. As long as it gets flush enough to go back in the cylinder it will protrude out enough to seal. For small pistons you can use a piece of plastic cut from a jug under a hose clamp. For larger pistons you can use a piston ring compressor designed for engine rebuilding.
For gland nuts that won't come lose I use hydraulic power one way or another. I usually strap the wrench into position and either use the loader on another tractor or I have used the power of the loader cylinder I was working on assuming it still worked.
Most of the cylinders I've done were much larger than the ones on our little Kubotas but the concept is the same.
If you have 22 minutes to waste here is a video of the last cylinder I rebuilt on my backhoe loader.