I am wanting to do the same thing on my B2400, so I bought a service manual.
Heres what I have found thus far.
on your Dynamo regulator, find the RY (RED with YELLOW) trace and the WR (WHITE with RED trace), these seem to be the common wires between the 2 systems AFTER the regular. they each appear to go to the same places AFTER the regulator.
On your ALT the T plug on the back, the horizontal slot is for the RW wire, the vertical slot is for the WR wire.
The stud on the back of the ALT is indeed the HOT lead off the ALT, find the 30A fuse near the Starter, that should trace back to the RED ( R) wire on the old regulator for Dynamo. this is what you hook to the stud, change the fuse to 50A
I also see that the charge light is wired differently, you'll have to open the dash to do this, I'll explain it more once I can scan the Schem...
This is the way the schem. in my manual, when I have time to scan it I will and forward it on to you .
Black ( B) is ground wire, on the regulator plug, cut off the plug and ground it to engine/chassis
The Sky Blue ( Sb ) wires off the Dynamo are the charge wires, you won't need those or the regulator anymore
I ASSUME that Kubota uses the same basic wiring for the smaller machines, I do not know this for sure, if the wire colors are the same as mentioned above....
and BTW, where did you get your alt ? I've seen a few on Fleabay in the $85-$100 range, wondering if they were worth trying.