The only shear bolt application I can see in the diagram is the HHCS 1/4-20X1 GR5 bolt which looks like it is associated with the auger. I know there are others I just could not specifically identify them.
The only advise I can give you with regard to this bolt specification is that the fully threaded GR5 bolt has a shear failure rating of 2,542 pounds. If the flange is over a non-threaded section of the bolt then the shear failure rating will be 3,534 pounds. That is just about a thousand pounds so I would use the fully threaded bolt if I was not sure.
I would also probably use a 1/4 bolt wherever I thought the bolt was providing shear protection and not a 3/8ths bolt. Just my opinion...
FYI:
BOLT
FINDINGS: Size Size Surface Shear Tensil Shear
(diam): (len): area: capability: strength: Failure (lbs):
Grade 8
not threaded 0.25 1.25 0.049087385 90,000 150,000 4,418
Grade 5
not threaded 0.25 1.25 0.049087385 72,000 120,000 3,534
Grade 2
not threaded 0.25 1.25 0.049087385 44,400 74,000 2,179
Grade 8
threaded 0.212 1.25 0.035298935 90,000 150,000 3,177
Grade 5
threaded 0.212 1.25 0.035298935 72,000 120,000 2,542
Grade 2
threaded 0.212 1.25 0.035298935 44,400 74,000 1,567
-Keith