Ah. I didn't clue in that you have a B7200. That's different. Your hydraulic block has the integrated by-pass valve for a FEL, rather than the square block with replaceable cover used on the B7100.
However, if anything, it think it would be easier on the B7200, as there is so much more pipe between the hydraulic block and the 3ph compared to the short length between the B7100 pump and hydraulic block. More pipe = less deflection required to absorb the excess length.
I don't think it is a flare nut. It looks too small in both length and diameter (although it's hard to be accurate working from a photo). It looks more like a compression fitting, possibly 3/8". If so, I don't think I would attempt to shorten the pipe at the compression fitting. It needs to be shortened less than the length of the ferrule from the end of the pipe. However, if access is available somewhere along it's length, a compression coupling would allow removal of the 1/4" or so required. A 3/8" compression fitting is typically rated for over 2,000psi. I would measure very carefully first though, and ensure it really is 3/8". There are some rare metric tube sizes out there and it is possible that Kubota used a metric diameter tube like 10mm