A bit off topic, but related. Years back, my Case 680 CK ate the balance shaft. Pull engine and do full rebuild. New sleeve and piston kit, bearings, seals, gaskets, balance shaft, oil pump, main and rod bolts, valves and guides, valve seats cut. The engine ran OK before it ate the balance shaft. ChecK everything against the Case shop manual. When timing the pump, I find the pump was off about 10 degrees (retarded) from where the injection should have started.
Reassemble the engine and start it. It makes three revolutions and starts. Up the rpm to about 1300 and it won't go above idle. Check pump timing, new filters for leaks, all fine.
Call a well respected diesel injection pump service center and explain everything to a tech there. He explained that the injection pump and injectors worked with a worn engine with lower than spec compression, but now can't overcome cylinder pressure to inject the fuel at any speed above idle. Sounds like bull, but what the hay...I pull the pump and 4 injectors and bring them to the shop.
The tech was nice enough to bring me in the back while he ran his "quick and dirty" pressure test on the pump and injectors. The injectors popped about a hundred pounds low, but all had a bad spray pattern. He showed me the correct spray pattern from another injector that was there as a standard and the difference was night and day.
Testing the injector pump showed it was a few hundred pounds low in output pressure across the board. I told him about the late pump timing and he said that this was done to allow the pump to work when it's output pressure was well below spec.
Rebuilt pump, rebuilt injectors, $1200 later I put everything in and the loader was a new animal. NO choking on the exhaust fumes, idle and governed speed right on the money.
I suspect that the injection pump has low output pressure and the injectors are in need or rebuild or replacement.
I hope all works out for you.