I am working from a table of error codes, and no direct experience, so hopefully someone who's worked on one will log on. In the meantime, PO563 is triggered when the ECU (computer controlling engine) sees a battery voltage above 16V in a 12V system. It says that trigger is an electrical problem in wiring harness or faulty battery. Problem is it then stops the EGR and there will be worsening exhaust gas performance.
P3008 is the code it throws when the PM particulate matter reaches level 5. Did you by chance get the first code and then continue to run the tractor? Did it ask to regenerate?
Level 5 is not a good spot to be in, don't run your tractor, yes it suggests that a manual regen was not done when it was needed, and now you might need a new dpf filter. At least get it to a dealer to have the computer checked out first. Hopefully if they can solve the first problem, they may be able to trigger a regen from their computer and all will be well. Please let us know how it comes out.