I like the idea of slipstream-type additional oil filtration (and see it in industrial settings), but the biggest problem I've had on all late model tractors is that there just isn't much room to hang the extra hardware and retain filter access. Specifically engine oil, but same is true for hydraulic fluid. My thoughts are to frequently replace the oil filters during the break-in period, and later reduce frequency keeping local operating conditions in mind.
For fuel, nothing beats the old glass sediment bowl with drain valve. I've got one of these on an old diesel (not Kubota) ahead of the supplemental inline fuel filter. Using the same bulk-storage diesel (stored under pressure, not exposed to atmosphere), I drain off a few drops of water and a particle or two (steel tank for storage and aboard machine) every few months.
If you can find a place aboard a Kubota to hang it, one of these type sediment bowl filters should be all you'd need. I'd put it between the tank and the OEM filter.
Same wrt installation specifics, a hygroscopic "water absorbent" canister filter ahead of the OEM filter should work wonders. I use Golden Rod brand on all my bulk fuel tanks (mogas and diesel) and they seem to work as advertised. If riding aboard a tractor and used ahead of the OEM filter, I can see that if a slug of water locked up the filter the machine might die at an inconvenient moment and lead to bleeding air to start.
Please advise back about your experiences so we may all learn.